PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4325_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BBR-BPC
Protein Properties Length: 331aa    MW: 36985.2 Da    PI: 10.0538
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4325_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind385.86.9e-11813311301
                            GAGA_bind   1 mdddgsre..rnkgyyepa..aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                                          mdd+g+re  r+k+    +    +++   +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+alaer
  cra_locus_4325_iso_1_len_1846_ver_3   1 MDDSGHREngRHKPP---QgqWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSALAER 71 
                                          999999877787772...222345555556******************************************** PP

                            GAGA_bind  71 nkalverdnkllalllvensla....salpvgvqvlsgtksidslqq..lse..pqledsavelreeeklealp 136
                                          n+a++erdn++++l+++ens++    s +p+g+q+ +g+k+++++qq  + +  +++++ ++++r++ +++  p
  cra_locus_4325_iso_1_len_1846_ver_3  72 NNAIIERDNAIATLQYRENSMNngnmSPCPPGCQIARGVKQMHHSQQqhV-HhqTHVGEAPFGTRDMPINDIIP 144
                                          ********************99998889****************999532.2468899**************** PP

                            GAGA_bind 137 ieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........................ 186
                                          + ++a+e+ + +k+k+++++k         + kk++ s kkvk+e +d +                        
  cra_locus_4325_iso_1_len_1846_ver_3 145 VPSTAPESVKPRKTKRTKEPKA---LA---PPKKTSRSSKKVKREAEDLNktmfgkshewkgqemvngsddlnk 212
                                          *999999998888875554443...22...222222223333333333112344455678899*********** PP

                            GAGA_bind 187 ....skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
                                              sk ++k++dl+ln+v++Dest+PvPvCsCtGalr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+
  cra_locus_4325_iso_1_len_1846_ver_3 213 qlvvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGALRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIG 286
                                          ************************************************************************** PP

                            GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                          grKmS++af+kl+++LaaeG+dls pvDLkdhWAkHGtn+++ti+
  cra_locus_4325_iso_1_len_1846_ver_3 287 GRKMSGSAFNKLISRLAAEGHDLSIPVDLKDHWAKHGTNRYITIK 331
                                          ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.1E-991331IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-1661331IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDDSGHRENG RHKPPQGQWL MHQPSMKQIM AIMAERDAAI QERNLALSEK KAALAERDMA  60
ILQRDSALAE RNNAIIERDN AIATLQYREN SMNNGNMSPC PPGCQIARGV KQMHHSQQQH  120
VHHQTHVGEA PFGTRDMPIN DIIPVPSTAP ESVKPRKTKR TKEPKALAPP KKTSRSSKKV  180
KREAEDLNKT MFGKSHEWKG QEMVNGSDDL NKQLVVSKPD WKDQDLGLNQ VAFDESTMPV  240
PVCSCTGALR PCYKWGNGGW QSSCCTTNLS MYPLPAVPNK RHARIGGRKM SGSAFNKLIS  300
RLAAEGHDLS IPVDLKDHWA KHGTNRYITI K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091662.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_027091663.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_027091665.10.0protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-146BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A068UIH30.0A0A068UIH3_COFCA; Uncharacterized protein
STRINGGLYMA04G02860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338