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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4298_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 133aa MW: 15827 Da PI: 10.3624 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 83 | 131 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+t E+e l av ++G+g+Wk+I + Rt ++k++w++ cra_locus_4298_iso_1_len_1056_ver_3 83 KRWSTLEEETLRSAVDKYGSGSWKLILMANRevfEERTVVDLKDKWRNM 131 69*************************99999**9************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.74 | 77 | 133 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 78 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.44E-13 | 79 | 132 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.17E-14 | 83 | 133 | No hit | No description |
Pfam | PF00249 | 8.9E-9 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MLSLFCKLKH XQNKKLNLHI FFWHANVYGH IYEFSSKWDE SLDDKPDIPP SGKRSRLPSP 60 EGLLVSPLKE SEANKFMKRR RPKRWSTLEE ETLRSAVDKY GSGSWKLILM ANREVFEERT 120 VVDLKDKWRN MTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 83 | MKRRRPKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241815.1 | 7e-32 | PREDICTED: uncharacterized protein LOC103340169 | ||||
TrEMBL | A0A251NLT4 | 5e-30 | A0A251NLT4_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A314URY1 | 7e-30 | A0A314URY1_PRUYE; Uncharacterized protein | ||||
TrEMBL | M5W4N5 | 5e-30 | M5W4N5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241815.1 | 3e-31 | (Prunus mume) |