PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4234_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 627aa    MW: 67550.9 Da    PI: 6.2067
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4234_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.4e-32267324260
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  cra_locus_4234_iso_3_len_2294_ver_3 267 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGQITEIVYKGSHDHPK 324
                                          8****************************************.***************85 PP
2WRKY106.21.7e-33436494159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  cra_locus_4234_iso_3_len_2294_ver_3 436 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 494
                                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-27255325IPR003657WRKY domain
PROSITE profilePS5081122.699261325IPR003657WRKY domain
SuperFamilySSF1182901.31E-24264325IPR003657WRKY domain
SMARTSM007745.0E-34266324IPR003657WRKY domain
PfamPF031064.5E-24267323IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37421496IPR003657WRKY domain
SuperFamilySSF1182902.62E-29428496IPR003657WRKY domain
PROSITE profilePS5081138.434431496IPR003657WRKY domain
SMARTSM007744.0E-39436495IPR003657WRKY domain
PfamPF031064.7E-26437493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MEKSLQNSYE DDEELEASSR RTCSAAEKDL GTRLISASEL NRDGNGATPE EVAAAAASAS  60
SAAIAHHNSV GCAKYKLMSP AKLPISRSPC TLTIPPGLSP TSFLESPVLL SNIKPEPSPT  120
TGSFSLSQLM QGSRDTVALS MVSNCSGVDA SNDPRAASFE FQFHRGPVAA SGPLGSMVSS  180
GINQQHSKQP VPVQDDGIPQ ALANSSLVNC EMSVSRPATM NISTTSATAA MDSDVQNQRG  240
HPNISGQASH SDNKETTSSI TSDRSSDDGY NWRKYGQKLV KGSEFPRSYY KCTYPNCEVK  300
KIFERSPDGQ ITEIVYKGSH DHPKPQPSRR FTPGALMSIQ EEKFDRDSSF TGQEDKSNIN  360
AQNSIIEPNS TPVPSPQEND DGLDAAAAPC ANDEIDEDDP FSKRRKLDGA VDITPVVKPI  420
REPRVVVQTV SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP  480
KAVITTYEGK HNHNVPTARN SSHEMAGPPP PTMSGISRMR PEDNDRISLD LGVGMSYGST  540
TDSRTNGQLN MLDQEPIRGQ VPPGSAPGRM MVQASPFSAC YGVVNGGSMT LYGSRENLVQ  600
NGSGFETAPL QPSNQCQQNL GRVLLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36267496877Probable WRKY transcription factor 4
2lex_A3e-36267496877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170019.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-159WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A068UZ040.0A0A068UZ04_COFCA; Uncharacterized protein
STRINGXP_009790875.10.0(Nicotiana sylvestris)