PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4230_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 279aa MW: 30973 Da PI: 8.0642

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4230_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.2	1e-20	156	246	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f kvl++s+v++ ++ lp +f++ h +++++ ++lede+g+++e+k+i +k++ l++GW++Fv+a++L cra_locus_4230_iso_6_len_895_ver_3 156 FMKVLVRSHVGSCFWMGLPVPFCKLHL--PRNDTPVVLEDENGEKFEIKYIAEKTG----LSAGWRKFVSAHKLV 224 89*******************9884..234567***********777777....*********** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 egD++vF+l++ ++f +v v+r+ cra_locus_4230_iso_6_len_895_ver_3 225 EGDVLVFQLISPTTF--KVYVVRA 246 *******986666..7777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.0E-24	151	247	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.3E-22	151	247	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.64E-29	154	245	No hit	No description
PROSITE profile	PS50863	14.198	156	247	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-18	156	246	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-25	156	247	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MRLKIKQVQP SPSPDFQNQE NHLDLDVMKK EIEENDNDKG NGCGWLNPEE NNSNNKSPPP 60 PDLSPTTPSV PQTLGKRKRK PKELIDEISP IFIRRKKKKA SNSASDQGMP DPGRSKLSKQ 120 VKAADDGSAP PVPLKSPTVV RAEEVQSNLG NEYPSFMKVL VRSHVGSCFW MGLPVPFCKL 180 HLPRNDTPVV LEDENGEKFE IKYIAEKTGL SAGWRKFVSA HKLVEGDVLV FQLISPTTFK 240 VYVVRANDMN EVDGALSLLN LETLTKQGDA EGAMDLKNX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	96	RKRKPKELIDEISPIFIRRKK
2	77	98	KRKPKELIDEISPIFIRRKKKK
3	93	98	RRKKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027154044.1	1e-133	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A068U4F2	1e-128	A0A068U4F2_COFCA; Uncharacterized protein
STRING	XP_009594239.1	2e-96	(Nicotiana tomentosiformis)