PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 211aa MW: 23835.9 Da PI: 8.2147

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_42252_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	2	97	5	100
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 Ck lrrkC+++Cv+apyfp +qp+kf nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg cra_locus_42252_iso_1_len_632_ver_3 2 CKCLRRKCTQECVFAPYFPPDQPQKFINVHKVFGASNVAKLLNDLNASQREDAVNSLAYEAEYRLRDPVYGCVG 75 ************************************************************************ PP DUF260 79 vilklqqqleqlkaelallkee 100 +i+ lq++l+q + +l ++k+e cra_locus_42252_iso_1_len_632_ver_3 76 LISVLQHRLKQIQYDLYSAKTE 97 ***********999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.103	1	98	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-39	2	94	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
XCKCLRRKCT QECVFAPYFP PDQPQKFINV HKVFGASNVA KLLNDLNASQ REDAVNSLAY 60 EAEYRLRDPV YGCVGLISVL QHRLKQIQYD LYSAKTELAS YIGPSAMLPI LQPGFVQQQH 120 PNNPSSSAVL PYHMQPMMGL QTGMASAHGG QLVIRDPQQQ QQHQQMLEAQ QMAAAAAARE 180 QEMLRAYQQQ QHQQQQALQP PVQQDLLRFN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-45	2	101	15	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-45	2	101	15	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233943.1	9e-96	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	2e-71	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3Q7F1F7	2e-94	A0A3Q7F1F7_SOLLC; Uncharacterized protein
STRING	Solyc02g065150.1.1	4e-95	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]