PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_41952_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 835aa    MW: 90782.9 Da    PI: 6.396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_41952_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21126181156
                                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                           +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  cra_locus_41952_iso_1_len_3227_ver_3 126 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 181
                                           688999***********************************************999 PP
2START206.79.2e-653335571205
                                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHH CS
                                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallvee 64 
                                           ela++a++elvk+a+++ep+W +s     e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+
  cra_locus_41952_iso_1_len_3227_ver_3 333 ELALAAMDELVKMAQSDEPLWLRSLeggrEILNHEEYMRTFTPCIGmkpngFVSEASRETGMVIINSLALVET 405
                                           5899**************************************998899************************* PP

                                           HCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEE CS
                                 START  65 llddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwviv 126
                                           l+d + +W e+++    + +t++vis+g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++v
  cra_locus_41952_iso_1_len_3227_ver_3 406 LMDAN-KWAEMFPcliaRSSTTDVISNGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVV 477
                                           *****.******************************************************************* PP

                                           EEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHH CS
                                 START 127 dvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwva 198
                                           dvS+ds ++p++  + +  +++lpSg+++++++ng+skvtwveh+d++++ +h+l+rsl++ g+ +ga++w a
  cra_locus_41952_iso_1_len_3227_ver_3 478 DVSIDSIREPSSaAPTFPHSRRLPSGCVVQDMPNGYSKVTWVEHADYDESFIHQLYRSLISAGMGFGAQRWIA 550
                                           ************9************************************************************ PP

                                           HTXXXXX CS
                                 START 199 tlqrqce 205
                                           tlqrq e
  cra_locus_41952_iso_1_len_3227_ver_3 551 TLQRQSE 557
                                           ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-20109183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-21113183IPR009057Homeodomain-like
PROSITE profilePS5007117.216123183IPR001356Homeobox domain
SMARTSM003899.9E-18124187IPR001356Homeobox domain
CDDcd000861.36E-18125183No hitNo description
PfamPF000461.4E-18126181IPR001356Homeobox domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PROSITE profilePS5084844.99324561IPR002913START domain
SuperFamilySSF559617.33E-34326558No hitNo description
CDDcd088757.80E-123328557No hitNo description
SMARTSM002344.0E-49333558IPR002913START domain
PfamPF018521.4E-56333557IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-5438541IPR023393START-like domain
SuperFamilySSF559617.69E-24580758No hitNo description
SuperFamilySSF559617.69E-24789820No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MNFGAFLDNN SGNGGNGGAK IVADIPYSDT TNNNTNMPTS AIAQQRLISH QPLAKSMFSS  60
PGLSLALQTS MEGQGEVGRM AENYESNSTI GGRRSREEEH ESRSGSDNMD GASGDDQDAA  120
DKPPRKKRYH RHTPQQIQEL EALFKECPHP DEKQRLELSK RLCLETRQVK FWFQNRRTQM  180
KTQLERHENS ILRQENDKLR AENMSIREAM RNPICTNCGG PAMIGEVSLE EQHLRIENAR  240
LKDELDRVCA LAGKFLGRPI HSPATSMAAL PNSSLELGVG GNGFGALSCV PTTLPLVPPD  300
FGVGISNPLP VRGPNSSSAT GIERSLERSM YLELALAAMD ELVKMAQSDE PLWLRSLEGG  360
REILNHEEYM RTFTPCIGMK PNGFVSEASR ETGMVIINSL ALVETLMDAN KWAEMFPCLI  420
ARSSTTDVIS NGMGGTRNGA LQLMHAELQV LSPLVPVREV NFLRFCKQHA EGVWAVVDVS  480
IDSIREPSSA APTFPHSRRL PSGCVVQDMP NGYSKVTWVE HADYDESFIH QLYRSLISAG  540
MGFGAQRWIA TLQRQSECLA ILMSSTVPAR DHSAAITASG RRSMLKLAQR MTDNFCAGVC  600
ASTVHKWNKL SATNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP QRLFDFLRDE  660
RLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ANQSSMLILQ ETCTDAAGSL  720
VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGPGSR GPTLPNGLTT NGPTSNGGGG  780
PNSHNRVSGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LHCEN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108261.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A068UK790.0A0A068UK79_COFCA; Uncharacterized protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]