PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4184_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 22051.5 Da PI: 11.0059 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.1 | 2.3e-11 | 95 | 177 | 13 | 96 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + l++p + ++++g +++ + + tl+d++gr+W + + + +++++ +GW +F++ n + ++D +v ++++ cra_locus_4184_iso_2_len_795_ver_3 95 REELYVPIEVLKDIG-VTRLPPKATLRDSKGRTWVTYRTKWHDGREFF-VGGWASFCRMNFVGDNDQCVCEFVKG 167 567899999998885.6678889***********87777777777765.56********************8855 PP .SEE..EEEE CS B3 88 .sefelvvkv 96 ++ el +++ cra_locus_4184_iso_2_len_795_ver_3 168 nKKNELIIQI 177 5888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-14 | 81 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-15 | 81 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.587 | 83 | 181 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.92E-9 | 84 | 177 | No hit | No description |
SMART | SM01019 | 0.0098 | 86 | 181 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-10 | 95 | 177 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
QENRRFQKQL KRELSILRKE VATLTRKVGE TESKDTNGGS RKSSRMKELP VQKPAGAKRG 60 RRKNPDYYGS AIFRSGILPL PKNPYFVAGV RPKRREELYV PIEVLKDIGV TRLPPKATLR 120 DSKGRTWVTY RTKWHDGREF FVGGWASFCR MNFVGDNDQC VCEFVKGNKK NELIIQIQVV 180 PTINNAKLQK TA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351837.1 | 8e-36 | PREDICTED: B3 domain-containing protein At5g60140-like | ||||
TrEMBL | M1AQ14 | 2e-34 | M1AQ14_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027673 | 3e-35 | (Solanum tuberosum) |