PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4171_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 724aa    MW: 79604.5 Da    PI: 6.8964
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4171_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23118219199
                                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++
  cra_locus_4171_iso_1_len_2413_ver_3 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSN 189
                                          89****************************986445444..8999***************************** PP

                                          HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                          Fv++++L +gD++vF   + +++ l+v+++r+
  cra_locus_4171_iso_1_len_2413_ver_3 190 FVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 219
                                          ****************..4488999****997 PP
2Auxin_resp112.93e-37289372183
                           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvr 73 
                                          aa+ a+++++FevvY+Pr  t+eFvvk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+  dp++
  cra_locus_4171_iso_1_len_2413_ver_3 289 AANLAANGQPFEVVYYPRGNTPEFVVKASAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVDDPFH 362
                                          7899********************************************************************** PP

                           Auxin_resp  74 WpnSkWrsLk 83 
                                          WpnS+Wr+L+
  cra_locus_4171_iso_1_len_2413_ver_3 363 WPNSPWRLLQ 372
                                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-37113225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29115219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-21117218No hitNo description
SMARTSM010192.6E-22118220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155118220IPR003340B3 DNA binding domain
PfamPF023621.4E-21118219IPR003340B3 DNA binding domain
PfamPF065073.3E-32289372IPR010525Auxin response factor
PROSITE profilePS5174518.17619699IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MDSVNSETEK CLEPQLWHAC AGGMVQMPAL SSKVFYFPQG HVEHANKKLD FGSFSRIPPL  60
ILCRMSSIKY LADSETDEVY AKLRLVPLQG GNDCDSDDDG GFIGCFDKNN EGEKPNSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTILA KDVHGEIWKF RHIYRGTPRR  180
HLLTTGWSNF VNQKKLVAGD SIVFLRAENG DLCVGIRRAK RGGIGGGLEV PSSGWNTGVG  240
NSGNSSLYGG FSGLLSEDEN RFMLNTKAGN GNMGKGMTGK LKAESVIEAA NLAANGQPFE  300
VVYYPRGNTP EFVVKASAVK AAMRIQWCSG MRFKMPFETE DSSRISWFMG TISSVQVDDP  360
FHWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNMPA IHLSPFSPPP RKKLRLPQPP  420
EFLLSGQLTM PSFLSSNHPL SPSSPLCCLS DNNINPAGGI QGARHPQFGV PSSEPLFNKL  480
QSAGLFPFKF KQQPDHHPTP APSKNHFSNM IMGNSISQSK ENVSCLLTIG NSSQELKTTA  540
QTKTPTTFTL FGKPILTEQQ ISGQSSSRES DGNCEKKKAN LSSASGSAVV QNGPPPEYSS  600
SDEVFAWCKD QKIEFGLETG HCKVFMESED VGRTMDLSVL GSYEELYQKL AKMFSLERSD  660
MLNNVIYQDM VGSVKHTGDE PFSDFLKSAR RITILMDSGS DNIGRXSFET GNELCLTLYS  720
TKTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-771539354388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104977.10.0auxin response factor 18
RefseqXP_027104978.10.0auxin response factor 18
RefseqXP_027104979.10.0auxin response factor 18
RefseqXP_027162063.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3XYM50.0A0A1S3XYM5_TOBAC; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]