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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
cra_locus_410_iso_5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family |
Whirly |
| Protein Properties |
Length: 241aa MW: 27208.9 Da PI: 10.6388 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_410_iso_5 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 175.2 | 1.4e-54 | 66 | 204 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesce 75
s++k+kaa+ + +f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s e
cra_locus_410_iso_5_len_1080_ver_3 66 SIFKGKAAFLQNQYFRQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVE 140
79************************************************************************* PP
Whirly 76 ffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
ffhdp++k+sn+G+vrk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++
cra_locus_410_iso_5_len_1080_ver_3 141 FFHDPSMKSSNAGQVRKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 204
*************************************************************995 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MMLRRVSNQF LKSIFRNQIF PKRTSAEVVG TSFWFQSITT QSEKSTAGKN FRADGKLGDR 60
VFASYSIFKG KAAFLQNQYF RQFSKSDSGG FRVDRRGSIM LKFWPSVGER KYNWEKKQAF 120
ALSATEVGAL INLGPHSSVE FFHDPSMKSS NAGQVRKSLS IKAQPDGSGY LFSLNVVNNI 180
LQTNERFVVP VTAAEFEVMR TAFSFALPHI LGWDQYTNQP PQSVSGKPLQ SALLMESEWD 240
K
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
| Annotation -- Protein
? help Back to Top |
| Source |
Hit ID |
E-value |
Description |
| Refseq | XP_027092747.1 | 1e-102 | single-stranded DNA-binding protein WHY2, mitochondrial-like |
| Swissprot | D9J034 | 1e-93 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial |
| TrEMBL | A0A1S4DCK9 | 1e-95 | A0A1S4DCK9_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X3 |
| TrEMBL | A0A1S4DCW1 | 1e-95 | A0A1S4DCW1_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4 |
| TrEMBL | A0A1U7W2E7 | 1e-95 | A0A1U7W2E7_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X3 |
| TrEMBL | A0A1U7WDQ3 | 1e-95 | A0A1U7WDQ3_NICSY; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2 |
| STRING | XP_009772771.1 | 1e-94 | (Nicotiana sylvestris) |
