 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_410_iso_3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
Whirly |
| Protein Properties |
Length: 183aa MW: 20753.7 Da PI: 10.0472 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_410_iso_3 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 165.3 | 1.6e-51 | 23 | 146 | 16 | 139 |
Whirly 16 ptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90
+f++ dsg ++++r+G+++l++ ++++erky+Wekkq falsatev+ l++l+++ s effhdp++k+sn+G+v
cra_locus_410_iso_3_len_1184_ver_3 23 RQFSKSDSGGFRVDRRGSIMLKFWPSVGERKYNWEKKQAFALSATEVGALINLGPHSSVEFFHDPSMKSSNAGQV 97
579999********************************************************************* PP
Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
rk+l+++ pdGsG++++l+v n+++++ne+f+vPv+ aef v+r++++
cra_locus_410_iso_3_len_1184_ver_3 98 RKSLSIKAQPDGSGYLFSLNVVNNILQTNERFVVPVTAAEFEVMRTAFS 146
**********************************************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
IEYLPPILFS RAKLRFLQNQ YFRQFSKSDS GGFRVDRRGS IMLKFWPSVG ERKYNWEKKQ 60
AFALSATEVG ALINLGPHSS VEFFHDPSMK SSNAGQVRKS LSIKAQPDGS GYLFSLNVVN 120
NILQTNERFV VPVTAAEFEV MRTAFSFALP HILGWDQYTN QPPQSVSGKP LQSALLMESE 180
WDK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
