PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_40490_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 370aa    MW: 40627 Da    PI: 6.6968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_40490_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.91.1e-16256290135
                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                           C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  cra_locus_40490_iso_1_len_1168_ver_3 256 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 290
                                           99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.479250286IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-16250300IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14252314No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13254288IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.19E-13255302No hitNo description
PfamPF003201.4E-14256290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440256281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
SEVVCNQNKP SFIEVRKMEA SSEFFTGGYF SHGGDREFHH EQKPAVIVDN NNNNFAVDDL  60
LDFPKEDEVM TDAFFDSITG NSGDSSSLTV VDSCNSSISG GEPQFNGSLS SRSFTDAQFS  120
GGELCVPYDD LAELEWLSNF VEESFSTDDL QNLHLISPNT NSKAAPVAAT AIADSSSSAT  180
TIVNSKSSST ISPIFPSDVS VPGKARSKRS RAPPCDWSSR LLLLSPANSS SETQPKAPKS  240
IPSKKREANE TPGRKCLHCA SEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP  300
TFMSTKHSNS HRKVMELRRQ KEMQRHQQQQ QQLLSQASIF GVSNGGDEFL IHHHHPHQQQ  360
NVGPDYRLMI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126918.11e-171GATA transcription factor 12-like
TrEMBLA0A068TPL61e-171A0A068TPL6_COFCA; GATA transcription factor
STRINGXP_009802675.11e-157(Nicotiana sylvestris)
STRINGXP_009628152.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363