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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4016_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 28922.4 Da PI: 9.4 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.6e-50 | 15 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp e+e yfFs+ k ++g+r+ cra_locus_4016_iso_3_len_1098_ver_3 15 LPPGFRFHPTDEELVVQYLRRKVFSCPLPA-SIIQEVDVCKSDPWDLPGD---LEQERYFFSTXGGKVPNGNRS 84 79****************************.89***************54...46799**************** PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat sgyWkatg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl cra_locus_4016_iso_3_len_1098_ver_3 85 NRATGSGYWKATGVDKQIVTSkSHQVVGMKKTLVFYRGKPPNGTRTDWIMHEYRL 139 *****************999856777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-58 | 11 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.524 | 15 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-27 | 16 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEKQLNFVKN GVLRLPPGFR FHPTDEELVV QYLRRKVFSC PLPASIIQEV DVCKSDPWDL 60 PGDLEQERYF FSTXGGKVPN GNRSNRATGS GYWKATGVDK QIVTSKSHQV VGMKKTLVFY 120 RGKPPNGTRT DWIMHEYRLV NVQETVAAAA CPHQHLAQDN WVLCRIFLKR RSGKKDEEMV 180 KSQNCKTKSG EMQGKKSGVV FYDFMAKERT DLNLAPVSSS SGSSGITEVT SNNDSDDHEE 240 SSSCSSFSAS VRRKTWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 13 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 13 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 13 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 13 | 175 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 13 | 175 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-51 | 13 | 175 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 13 | 175 | 15 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086848.1 | 1e-129 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 6e-97 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2I4G512 | 1e-124 | A0A2I4G512_JUGRE; NAC domain-containing protein 83-like | ||||
STRING | cassava4.1_014491m | 1e-124 | (Manihot esculenta) |
Publications ? help Back to Top | |||
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