 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_3991_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 274aa MW: 30366.1 Da PI: 8.8158 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_3991_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.1 | 3.6e-19 | 120 | 174 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq +Le+ F+++ +++ ++++ LAk+l+L rqV vWFqNrRa+ k
cra_locus_3991_iso_1_len_1238_ver_3 120 RKKLRLTKEQSLILEDSFKEHTTLNPKQKQALAKRLNLRPRQVEVWFQNRRARTK 174
78889************************************************98 PP
|
| 2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 120 | 208 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74
+kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+dye Lk+++++lk
cra_locus_3991_iso_1_len_1238_ver_3 120 RKKLRLTKEQSLILEDSFKEHTTLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDYEILKKCCETLK 193
69************************************************************************ PP
HD-ZIP_I/II 75 eenerLekeveeLre 89
een+rL+ke +eL++
cra_locus_3991_iso_1_len_1238_ver_3 194 EENRRLHKELQELKA 208
*************94 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MVSDHHSICS TRLSLSLGSN SNDPTNGNDQ RNKFLTQNGH LMFPSLTLGL SSSSTDQIIT 60
SGKPDQASSM SAVSNSFSNS SVKRERDQDN ISVEEVEVER IISSKVDHQD QDEDQLVGPR 120
KKLRLTKEQS LILEDSFKEH TTLNPKQKQA LAKRLNLRPR QVEVWFQNRR ARTKLKQTEV 180
DYEILKKCCE TLKEENRRLH KELQELKAMK LTAGPLYMQL PAATLSMCPS CERITGGGGG 240
GGSGGENSSN KISFSTGTKP HFYGPPFANT PAAC
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 168 | 176 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
