PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3988_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

BES1

Protein Properties

Length: 701aa MW: 78608.5 Da PI: 5.2602

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3988_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	140.6	1.5e-43	72	212	1	131
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.... 70 gg++r ++++E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ cra_locus_3988_iso_2_len_2591_ver_3 72 GGTRRCRPQEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsq 145 578999*************************************************************98888 PP DUF822 71 .kgskpl..eeaeaagssas...aspesslqsslkssalaspvesysaspksssfpspssldsisla 131 +g++p+ +++ ++ ss s ++++ s++++ ss ++ v+ ++++ks+ +p +s +d s+ cra_locus_3988_iso_2_len_2591_ver_3 146 gQGTRPTgvTSTTVMTSSPShmpVQQTPSVSLRGISSGYQTTVDYNACQMKSVFIPTSSPFDASSSI 212 888999987566666666664433444455578889********************999987654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.9E-39	74	208	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	9.17E-181	258	697	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.6E-197	261	695	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.4E-104	267	685	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	298	312	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	319	337	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	341	362	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	5.0E-5	424	433	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.2E-67	434	456	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	507	526	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	541	557	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	558	569	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	576	599	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.2E-67	616	638	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	5.0E-5	667	681	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	5.0E-5	682	696	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MATELQRFVT SEDDDEEMGM DVKEEDDEDD DEGEKNVEPP IMVGVDGGLA SANSNASFLH 60 HQSYQEQPTS QGGTRRCRPQ EEKERTKLRE RQRRAITAKI LAGLRRHGNY NLRVRADIND 120 VIAALAREAG WVVLPDGTTF PSRSQGQGTR PTGVTSTTVM TSSPSHMPVQ QTPSVSLRGI 180 SSGYQTTVDY NACQMKSVFI PTSSPFDASS SIRSQTTTLI GDGGDAQNDP LLGGSIDSID 240 NKQVIDMPLP TKLQERDFAG TPYVPVYVML PLGIINMKCE LTDPDGLVKQ LRALKSIKVD 300 GVMVDCWWGI VEAHAPQEYN WNGYKQLFQI ARELKLKLQV VMSFHECGGN IGDDVCIPLP 360 HWVAEIGRSN PDIFFTDRAG RRNPECLSWG IDKERVLRGR TAVEVYFDYM RSFRVEFDEF 420 FEDGIISLIE VGLGPCGELR YPSYPVKHGW RYPGVGEFQC YDQYLLKNLR KAAEARGHLF 480 WARGPDNAGS HNSRPHETGF FCDGGDYDGY YGRFFLNWYS QVLVDHGDRV LSLAKLAFED 540 TCIAAKLSGI PWWYKTASHA AELTAGFYNS CNRDGYAATM AMLKKHGVTV NFTCAGMSTL 600 NEHINFSESL ADPEGLCWQV LNAAWDACVP VTSENSLPCH DRESFNYLLE KAKPLNDPDG 660 RHFSAFTYLR LGPLLMERHN FLEFERFVKR MHGEAVLDLQ V

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MATELQRFVT SEDDDEEMGM DVKEEDDEDD DEGEKNVEPP IMVGVDGGLA SANSNASFLH  60
HQSYQEQPTS QGGTRRCRPQ EEKERTKLRE RQRRAITAKI LAGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQGQGTR PTGVTSTTVM TSSPSHMPVQ QTPSVSLRGI  180
SSGYQTTVDY NACQMKSVFI PTSSPFDASS SIRSQTTTLI GDGGDAQNDP LLGGSIDSID  240
NKQVIDMPLP TKLQERDFAG TPYVPVYVML PLGIINMKCE LTDPDGLVKQ LRALKSIKVD  300
GVMVDCWWGI VEAHAPQEYN WNGYKQLFQI ARELKLKLQV VMSFHECGGN IGDDVCIPLP  360
HWVAEIGRSN PDIFFTDRAG RRNPECLSWG IDKERVLRGR TAVEVYFDYM RSFRVEFDEF  420
FEDGIISLIE VGLGPCGELR YPSYPVKHGW RYPGVGEFQC YDQYLLKNLR KAAEARGHLF  480
WARGPDNAGS HNSRPHETGF FCDGGDYDGY YGRFFLNWYS QVLVDHGDRV LSLAKLAFED  540
TCIAAKLSGI PWWYKTASHA AELTAGFYNS CNRDGYAATM AMLKKHGVTV NFTCAGMSTL  600
NEHINFSESL ADPEGLCWQV LNAAWDACVP VTSENSLPCH DRESFNYLLE KAKPLNDPDG  660
RHFSAFTYLR LGPLLMERHN FLEFERFVKR MHGEAVLDLQ V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1uko_A	1e-148	263	694	11	444	Beta-amylase
1uko_B	1e-148	263	694	11	444	Beta-amylase
1uko_C	1e-148	263	694	11	444	Beta-amylase
1uko_D	1e-148	263	694	11	444	Beta-amylase
1ukp_A	1e-148	263	694	11	444	Beta-amylase
1ukp_B	1e-148	263	694	11	444	Beta-amylase
1ukp_C	1e-148	263	694	11	444	Beta-amylase
1ukp_D	1e-148	263	694	11	444	Beta-amylase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115178.1	0.0	beta-amylase 7-like isoform X1
Refseq	XP_027162038.1	0.0	beta-amylase 7-like isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A068UKR6	0.0	A0A068UKR6_COFCA; Beta-amylase
STRING	VIT_15s0046g02640.t01	0.0	(Vitis vinifera)

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]