![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_3882_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 383aa MW: 42761.1 Da PI: 4.5052 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.6e-07 | 17 | 60 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++r C+ ++e + l+C+ ++ lC C + H+ Ht+ cra_locus_3882_iso_7_len_1808_ver_3 17 NPRLCDFCGESTALLYCRADSAKLCLACDRQVHSTnqlftkHTR 60 6799******99*********************66778888875 PP | |||||||
2 | zf-B_box | 25 | 4e-08 | 63 | 107 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 C+++++ ++++fC ++++ +C++C e+H++ H+++pl cra_locus_3882_iso_7_len_1808_ver_3 63 LCDRCDSTPATIFCCTDCSVFCQNCDWESHNNngsfqslHDRRPL 107 6*****************************889999999998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 16 | 63 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.5E-15 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.2E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.11E-8 | 19 | 60 | No hit | No description |
PROSITE profile | PS50119 | 9.442 | 59 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.18E-5 | 63 | 107 | No hit | No description |
SMART | SM00336 | 0.65 | 64 | 107 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MIMNSLGQKQ LQEDAENPRL CDFCGESTAL LYCRADSAKL CLACDRQVHS TNQLFTKHTR 60 WLLCDRCDST PATIFCCTDC SVFCQNCDWE SHNNNGSFQS LHDRRPLEGF TGCPSVNELL 120 GILGFEDLSK KGLLFGDDCI GTCGQRDGEE DVNSGIESEN IYGFSDMLVW ETPSVVSLDD 180 FIVSNSSSPG HNFQAMGVPP LPKNRNATCG KHKEEILFQL QEMSXLEPNS GDHERETQPL 240 IEFQPLVPGN NHQSLQMDAS LNQNSQSTLA SSHQVNSFQW CGNGDEVADQ GFNTLLDSYI 300 DMNQLIPDKD SDVGDSLGQV NGSCEDQSHH HVTTETCQIV PGVAVRELNS QERDSAISRY 360 KEKRKTRRYA WFYCSSHNKV LLD |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629413.1 | 1e-143 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
Refseq | XP_016509923.1 | 1e-143 | PREDICTED: zinc finger protein CONSTANS-LIKE 13-like | ||||
TrEMBL | A0A1S4D964 | 1e-142 | A0A1S4D964_TOBAC; zinc finger protein CONSTANS-LIKE 13-like | ||||
STRING | XP_009629412.1 | 1e-142 | (Nicotiana tomentosiformis) |