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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_384_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 442aa MW: 50969.3 Da PI: 8.493 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.5 | 6.1e-07 | 107 | 128 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +L++H+++H cra_locus_384_iso_9_len_1601_ver_3 107 VCHECGVSFKKPAYLRQHMQSH 128 6*******************99 PP | |||||||
2 | zf-C2H2 | 17.8 | 9.2e-06 | 160 | 184 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH+ H cra_locus_384_iso_9_len_1601_ver_3 160 FTCPvdDCHSSYRRKDHLTRHLLQH 184 89*******************9887 PP | |||||||
3 | zf-C2H2 | 17.4 | 1.2e-05 | 189 | 214 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C+++F + n++rH++ H cra_locus_384_iso_9_len_1601_ver_3 189 FECPvdNCKRRFAFQGNMRRHMKEfH 214 89*********************988 PP | |||||||
4 | zf-C2H2 | 19.6 | 2.5e-06 | 228 | 252 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L++H +H cra_locus_384_iso_9_len_1601_ver_3 228 YVCSeiGCGKVFKYASKLRKHEDSH 252 99*******************9888 PP | |||||||
5 | zf-C2H2 | 14.4 | 0.00011 | 319 | 343 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ snL++Hi+ H cra_locus_384_iso_9_len_1601_ver_3 319 KCSfdGCAHTFSTMSNLNQHIKAvH 343 688889***************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.22E-6 | 60 | 129 | No hit | No description |
SMART | SM00355 | 32 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-6 | 98 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0098 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-8 | 157 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 160 | 189 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0059 | 160 | 184 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.51E-7 | 170 | 233 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 187 | 211 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.221 | 189 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.005 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.79E-5 | 225 | 254 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-7 | 225 | 252 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 228 | 257 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 228 | 252 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 230 | 252 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.63 | 260 | 285 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 262 | 285 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 16 | 288 | 309 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.66E-7 | 301 | 356 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 318 | 348 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0049 | 318 | 343 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 319 | 344 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 320 | 343 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 16 | 349 | 375 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 351 | 375 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
XXWELAALAE CECALLSTPG FLTKSGAPHR NSSTSPLSEI VSKVEMVEEK SKPVIFRDIR 60 RYYCEYCGIC RSKKALISAH ILSHHQDDLK QGEEDKRETH NGPKMNVCHE CGVSFKKPAY 120 LRQHMQSHSL EAVKHWIPHK ELQNARGQCX LECDQYQRPF TCPVDDCHSS YRRKDHLTRH 180 LLQHQGKLFE CPVDNCKRRF AFQGNMRRHM KEFHMEPSSS DEVSAKQYVC SEIGCGKVFK 240 YASKLRKHED SHVKLETVEA FCSEPGCMKY FTNEQCLKEH IRSCHQHITC EKCGTRQLKK 300 NIKRHLRMHE AGVSSERTKC SFDGCAHTFS TMSNLNQHIK AVHLELTPFA CGFPGCGMKF 360 SFKHVRDHHE KSSRHVYSHG DFEASDEQFR SRPRGGRKRK YPVIETLMRK RIVPPGEADP 420 ILNNGSEYLS RLLSSGESED DM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 9e-13 | 157 | 280 | 40 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 9e-13 | 157 | 280 | 40 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 391 | 399 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027098504.1 | 0.0 | transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 1e-111 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A068V6C1 | 0.0 | A0A068V6C1_COFCA; Uncharacterized protein | ||||
STRING | VIT_08s0040g00240.t01 | 0.0 | (Vitis vinifera) |