PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_3737_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 282aa MW: 32077.8 Da PI: 5.1845

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_3737_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.9	7e-10	16	85	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt +e +L++ + +e + ++ + ++W+ v +++ + ++rs +qCk+kw +l +ykk+k +e++ cra_locus_3737_iso_3_len_1597_ver_3 16 WTVSECVTLVNEISAIEGEWLQSVASFQKWQLVVENCNALEINRSLNQCKKKWAELLAEYKKVKPWEEGY 85 9*****************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-8	15	84	No hit	No description
PROSITE profile	PS50090	6.4	16	72	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MERGSRCTRS QAAPDWTVSE CVTLVNEISA IEGEWLQSVA SFQKWQLVVE NCNALEINRS 60 LNQCKKKWAE LLAEYKKVKP WEEGYWSCDS NEREELGLPE GFDRELFKAI DRYVKKKGGD 120 DNAEGPETDP ESDSQTPANT NKFVWKTGPK KQRRKMMTRK RKIDESFHPW RTSVSINTKQ 180 ESSSLNQMPE LPRNDIVSEM KLQPDGEKTK GKRSCXAELL KSTELINATL QGNLAENVEA 240 DSKNAEAVQI DFNRLQGDRL IDCLGTIANT LAQLCDLVHE CN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027149092.1	1e-101	uncharacterized protein LOC113749527
Refseq	XP_027149093.1	1e-101	uncharacterized protein LOC113749527
TrEMBL	A0A068VBT6	8e-97	A0A068VBT6_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8360	21	24