PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_36623_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 127aa MW: 14247.5 Da PI: 9.9226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 2 | 24 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_36623_iso_1_len_405_ver_3 2 FSCNYCRRKFYSSQALGGHQNAH 24 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.053 | 2 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.8E-6 | 2 | 29 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 4 | 24 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
VFSCNYCRRK FYSSQALGGH QNAHKLERTL AKKSRELSSS VRPHAGHNNH HHRPAAGSSF 60 SGGGGQIHHM PQPTIYHGYR RFGNDVVGSY NGLENNHWNN NNNNKGYKSS ESVDEDFTGQ 120 LDLSLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023921059.1 | 2e-32 | zinc finger protein 7-like | ||||
Swissprot | Q39266 | 5e-19 | ZFP7_ARATH; Zinc finger protein 7 | ||||
TrEMBL | A0A2N9IMT3 | 3e-29 | A0A2N9IMT3_FAGSY; Uncharacterized protein | ||||
STRING | XP_009798282.1 | 1e-26 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8876 | 21 | 28 |
Publications ? help Back to Top | |||
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