PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_35394_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 337aa MW: 36384.4 Da PI: 9.0686

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_35394_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	64	123	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ cra_locus_35394_iso_1_len_1163_ver_3 64 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 123 7789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	47	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	66	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
QQFPNHHHEL ITTTSQPSLP PPVPPPLPPP PPPVAQSHHG GLSGSIRPGS MSERARLANV 60 PMPETALKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV PVGGGCRRNK 120 RTKSTSSNNN SPVSSSDRQT NNSSNSTNSS TVSSTSVQIP PLGFLSPLSQ LTSHDHHFSA 180 SDINLNNYGG ISTPVTSEMN FQLGTNFLGI NSNVGVGVGI DQQWRLPQAQ QFPFLGGLDL 240 SSSALYGQLQ GSIEPSSFVG ETSHQVRPKL LSSAILTQLA SVKMEEHNQD QMNLSRQLMM 300 GIPGNDTNNL QWNSGSSVAA AWTDLSSFSS SSTSNPL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175092.1	1e-116	dof zinc finger protein DOF2.4
TrEMBL	A0A068UG68	1e-114	A0A068UG68_COFCA; Uncharacterized protein
STRING	EOY07547	2e-95	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63