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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_35120_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19123.4 Da PI: 10.2938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.5 | 4.4e-22 | 5 | 84 | 58 | 128 |
NAM 58 wyfFskrdkkyatgkrknratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdW 121 +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+W cra_locus_35120_iso_1_len_512_ver_3 5 KHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNW 77 69*****************73334555544778************.999***********5547999999**** PP NAM 122 vmheyrl 128 vmh+y+l cra_locus_35120_iso_1_len_512_ver_3 78 VMHQYHL 84 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.467 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-24 | 3 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-8 | 6 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
DGLSKHFFHR PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMVN GKQKGCKKIL 60 VLYTNFGKNR KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSSERANVNT 120 TTTTASGEGN SSDPTIISRR DSGGGSCSSR EINIGHRDEI MSNAAAAAAA A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025656168.1 | 1e-96 | NAC domain-containing protein 75 | ||||
Refseq | XP_025656169.1 | 1e-96 | NAC domain-containing protein 75 | ||||
Refseq | XP_025656170.1 | 1e-96 | NAC domain-containing protein 75 | ||||
Swissprot | Q9M0F8 | 2e-75 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A444YZJ0 | 5e-96 | A0A444YZJ0_ARAHY; Uncharacterized protein | ||||
STRING | XP_006451346.1 | 2e-91 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4057 | 24 | 44 |
Publications ? help Back to Top | |||
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