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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3465_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 732aa MW: 81226.1 Da PI: 5.4324 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 669 | 723 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r rWT+ E e+l+++vk++ + Wk+I + kgRt ++k++w++ cra_locus_3465_iso_7_len_3028_ver_3 669 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 723 569*****************************655446666*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 1.6E-5 | 429 | 470 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 2.04E-5 | 430 | 470 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50090 | 7.004 | 664 | 725 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-10 | 665 | 730 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-9 | 666 | 726 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-5 | 668 | 727 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.10E-12 | 670 | 726 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRIQTLFAPG SQNDNADTSA 60 LCQKDEFDPA NSCEDVLCHI LQKVSDIKSQ TGAPEMLKWD GQXPLLPIKE TPCNVALQKV 120 XQDCLNSDIN VLFGKMFSLV LQSLVLRISD EELKDAMFEG SHSVFLSLKE RSGLVGRAHC 180 DDKIPGDVDN SNGPVQEFEG RIKDVQVVLP NQVVSPSTSK NGVDVSQERV PDRNSPPSKR 240 NRTDSNGGKP ERDTHKDQIM QEDCYDPCAE TAKKFKPDVH ITECAAVEKL RTSAKDGPLA 300 NSSERIAEHI DKKRCNLENE AEIGGMAMEY IGTHDAGNQH AAKKFKQGVN IAALARVVKS 360 IASTGDLLLT DFDFDNDGAN PFAATDGDEY HDERNDIGSK KKLSLALSAD TMKIPWKHNK 420 LYVXSAIVAG NFLFCSSNTC PXVVHESCLG SAAKFDGDGK FNCSFCAYSR ALSEYLEVKT 480 KASLARKDLS TFIGLKVGNQ PKLSMRSRKS KQNPVTGIDE LNENHEENVD GDSLNKADHT 540 YRRTNVEDRL QAEPSISYVG NGPPCSEKVL YLTHGELNAL ENENVEGEGR EQERQSPIQP 600 EEQQIVIFQK SDGDISSPKQ ADIDYGNGGQ ALIIRQNDEE SSGLKYSMRP RTDNEKCTYP 660 AIPQLRRKRH RWTEAEVEKL KEGVKKFSAE ESLSIPWKAI FEFGADVFQK GRTSVDLKDK 720 WRNICKMDQK SE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3406 | 8 | 9 |