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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3465_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 688aa MW: 77061.3 Da PI: 6.3237 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 625 | 679 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r rWT+ E e+l+++vk++ + Wk+I + kgRt ++k++w++ cra_locus_3465_iso_5_len_2694_ver_3 625 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 679 569*****************************655446666*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 1.5E-5 | 385 | 426 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.9E-5 | 386 | 426 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50090 | 7.004 | 620 | 681 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-10 | 621 | 686 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-9 | 622 | 682 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-5 | 624 | 683 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.22E-12 | 626 | 682 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MTLAIVVEDR SGTGADTELA ERLGGEVKKK KKXXXXLLYI WIGTSLNSPE KISTVLQNDD 60 ARKSRDIPLC SSWNFPKLLQ KLHPVIQDFA VRLEINSHLK XFSDLVRNTP ELSVDIGKKC 120 KGTGSFRILE TLFAQGSQND YADASAICQK VEFNPSDSCE NVLWHMLHEM WTSNLKPGAP 180 EILKWDVQAF IAHKRNSLPM VALQKLMDAT LEEQIMQEDC YVPRAEPAKN FKLDVHMIEC 240 TAVEKLRTSA KDGPLANSSE RIAEHIDKKR CNLENEAEIG GMAMEYIGTH DAGNQHAAKK 300 FKQGVNIAAL ARVVKSIAST GDLLLTDFDF DNDGANPFAA TDGDEYHDER NDIGSKKKLS 360 LALSADTMKI PWKHNKLYVX SAIVAGNFLF CSSNTCPXVV HESCLGSAAK FDGDGKFNCS 420 FCAYSRALSE YLEVKTKASL ARKDLSTFIG LKVGNQPKLS MRSRKSKQNP VTGIDELNEN 480 HEENVDGDSL NKADHTYRRT NVEDRLQAEP SISYVGNGPP CSEKVLYLTH GELNALENEN 540 VEGEGREQER QSPIQPEEQQ IVIFQKSDGD ISSPKQADID YGNGGQALII RQNDEESSGL 600 KYSMRPRTDN EKCTYPAIPQ LRRKRHRWTE AEVEKLKEGV KKFSAEESLS IPWKAIFEFG 660 ADVFQKGRTS VDLKDKWRNI CKMDQKSE |