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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3465_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 603aa MW: 67636.2 Da PI: 7.2474 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 540 | 594 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r rWT+ E e+l+++vk++ + Wk+I + kgRt ++k++w++ cra_locus_3465_iso_1_len_2640_ver_3 540 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 594 569*****************************655446666*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 1.2E-5 | 300 | 341 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.48E-5 | 301 | 341 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50090 | 7.004 | 535 | 596 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-10 | 536 | 601 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-10 | 537 | 597 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-5 | 539 | 598 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.24E-12 | 541 | 597 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FXNPKLYLLR EAKTIMLTPL 60 PYVKKMNLIQ RIAVRMFCAI YCRRCLTSNL KPGAPEILKW DVQAFIAHKR NSLPMVALQK 120 LMDATLEEQI MQEDCYVPRA EPAKNFKLDV HMIECTAVEK LRTSAKDGPL ANSSERIAEH 180 IDKKRCNLEN EAEIGGMAME YIGTHDAGNQ HAAKKFKQGV NIAALARVVK SIASTGDLLL 240 TDFDFDNDGA NPFAATDGDE YHDERNDIGS KKKLSLALSA DTMKIPWKHN KLYVXSAIVA 300 GNFLFCSSNT CPXVVHESCL GSAAKFDGDG KFNCSFCAYS RALSEYLEVK TKASLARKDL 360 STFIGLKVGN QPKLSMRSRK SKQNPVTGID ELNENHEENV DGDSLNKADH TYRRTNVEDR 420 LQAEPSISYV GNGPPCSEKV LYLTHGELNA LENENVEGEG REQERQSPIQ PEEQQIVIFQ 480 KSDGDISSPK QADIDYGNGG QALIIRQNDE ESSGLKYSMR PRTDNEKCTY PAIPQLRRKR 540 HRWTEAEVEK LKEGVKKFSA EESLSIPWKA IFEFGADVFQ KGRTSVDLKD KWRNICKMDQ 600 KSE |