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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3368_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 574aa MW: 61814.6 Da PI: 5.1268 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 386 | 428 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L cra_locus_3368_iso_3_len_2184_ver_3 386 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 428 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.58 | 379 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-16 | 382 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 385 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-14 | 385 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-16 | 386 | 441 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.80E-13 | 386 | 432 | No hit | No description |
CDD | cd04873 | 6.52E-7 | 503 | 563 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MVWMDGKDQE TGSWDQNPMN NVGANSNNNN QNGVLENKDD MEMGPLSTFK SMLEVEDEDW 60 YLASNQNHHG NNNNNSVDGG NNGGNMQSHH ELRDLTFSAN FTDADQNLML HPVDSSASCS 120 PSPASVFNNL DPSQVHHYFL QPPPKTNLLS GLNVLSGSQL DGSGFDLGCE TSGLLGNHQG 180 LSAFGRGGVG IVNGGFSDLG SQSQISSPNL NSGTQFSSAH LLQMPQNTGG GFGTFGFGEG 240 SGNVNSLFLN RSKLLQPLDN FTSVGAQPTL FQKRAALRKN LATNGSNLGV LGGEIGQSSA 300 TSLDAYKNKE IGEVNLLKRK NSTGDDFEDA SIDGSNLNYD SDDLTENTKL VEDGIRNGGN 360 SSNANSTVTG EDQKGKKKGL PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD 420 AIEYLKELLQ KINDLQNELE STPSGSSLTP TTTFYPLTPT ASALPCRIKE EMCPSSFASP 480 LSSPTGQPAR IEVRLREGRA VNIHMFCGRR PGLLLSTMRA LDSLGLDIQQ AVISCFNGFA 540 LDIFRAEQCK EGQDIPPEHI KAVLLDSAGF QGMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 381 | 438 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 393 | KKKGLPAKNLMAERRRRKK |
2 | 387 | 394 | ERRRRKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027122788.1 | 0.0 | transcription factor ICE1-like | ||||
Refseq | XP_027122789.1 | 0.0 | transcription factor ICE1-like | ||||
TrEMBL | A0A068VGT4 | 0.0 | A0A068VGT4_COFCA; Uncharacterized protein | ||||
STRING | XP_009769541.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2703 | 24 | 52 |