![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_33244_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 88aa MW: 9658.34 Da PI: 8.0603 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.0008 | 2 | 20 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + cra_locus_33244_iso_2_len_262_ver_3 2 DCGTLFSRRDSFITHRAFC 20 8**************8765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 88 aa Download sequence Send to blast |
XDCGTLFSRR DSFITHRAFC DALAEESART ISGNPLLSSQ SAIAMAPSSS SSSASQFIFS 60 MKKEQQTFNL RPEIPPWLAC PNRNPNPX |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126921.1 | 4e-30 | protein indeterminate-domain 7-like | ||||
Refseq | XP_027167588.1 | 4e-30 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 7e-15 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A068TNU1 | 1e-28 | A0A068TNU1_COFCA; Uncharacterized protein | ||||
STRING | XP_009774627.1 | 8e-27 | (Nicotiana sylvestris) | ||||
STRING | PGSC0003DMT400006385 | 8e-27 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
---|---|---|---|
|