PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3323_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-X1
Protein Properties Length: 294aa    MW: 32817.7 Da    PI: 8.0382
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3323_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.6e-061935319
                            zf-NF-X1  3 kHkCqklCHeGpCppCp 19
                                        +HkC ++CH+G C pCp
  cra_locus_3323_iso_7_len_879_ver_3 19 NHKCPAPCHRGACAPCP 35
                                        7***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.48E-9755No hitNo description
SMARTSM004380.00431736IPR000967Zinc finger, NF-X1-type
SMARTSM00438657495IPR000967Zinc finger, NF-X1-type
SMARTSM004387.9185218IPR000967Zinc finger, NF-X1-type
SMARTSM004381228246IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
XGDCPPCSEM CDRRLRCRNH KCPAPCHRGA CAPCPVMVTI SCACGETHFE VPCGTETQQK  60
PPKCPKPCRL TPLCRHGAIS KPHKCHYGAC PTCRLICDEE YPCGHWCKLR CHGPRPPPLP  120
EFTLKPKKKK SNHEPEYIPG SPCPPCPELV WRSCLGHHIG AERMMVCSDR TLFSCDNLCG  180
SPLPCGNHYC TKLCHRLKSD SSKSDGHIQS ESCDECNLPC QKDRDPPCSH PCPLHCHPGD  240
CPPCRSLIKR SCHCGSMVHV FECIYYNTLF EKDQMVVRSC GGPCHRKLPN CPHX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110794.11e-158NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-144NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A068V0H51e-160A0A068V0H5_COFCA; Uncharacterized protein
STRINGXP_009783479.11e-156(Nicotiana sylvestris)