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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3304_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 524aa MW: 56959.6 Da PI: 9.2841 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H cra_locus_3304_iso_2_len_2011_ver_3 68 FICEICNKGFQREQNLQLHRRGH 90 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ cra_locus_3304_iso_2_len_2011_ver_3 145 WKCEKCSKKYAVQSDWKAHSKTC 167 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.88E-7 | 67 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-6 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.1E-5 | 68 | 90 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0044 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.88E-7 | 140 | 165 | No hit | No description |
SMART | SM00355 | 140 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DAEVIALSPK 60 TLMATNRFIC EICNKGFQRE QNLQLHRRGH NLPWKLRQKT NKDQVKKKVY ICPEKSCVHH 120 DPCRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALAEES SRITSIPTSN LNFRNDLPAH VFTGGSTGIP QIGGAEFGNQ 240 LKPPPPRLSL WLDQANSQQL NSVDVSGNSS IYMNSANIFT SSAGGNLSLS PLPPLQQSLK 300 DVDGGIMNKS TSMAETLSSL FSDDNHRNIG SNSSGPMSAT ALLQKAAQMG STKSNPIFFS 360 NSLGVMSSSN SSSSSPVPVP VPAFSLSHNR NQQLLQTTTS SLDNNSFEFD QSMLQTSQNE 420 SPSTTTVTMM NFQGQGLNGG SVEHHNSLTR DFLGMGAGEG GRPLLPHELA KFASMSSAMG 480 LDLGHFSSHH XSQSALVSTN VAYHSPSETD SIQTRNREFI TLYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-38 | 141 | 210 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-38 | 141 | 210 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027175139.1 | 1e-177 | zinc finger protein JACKDAW | ||||
TrEMBL | A0A068UDX2 | 1e-174 | A0A068UDX2_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_032876m | 1e-173 | (Manihot esculenta) |