PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3304_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 526aa    MW: 57171.8 Da    PI: 9.144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3304_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-057092123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         + C++C+k F r  nL+ H r H
  cra_locus_3304_iso_1_len_2014_ver_3 70 FICEICNKGFQREQNLQLHRRGH 92
                                         89*******************88 PP
2zf-C2H212.70.00039147169123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC++C+k +  +s+ k H +t+
  cra_locus_3304_iso_1_len_2014_ver_3 147 WKCEKCSKKYAVQSDWKAHSKTC 169
                                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.99E-76992No hitNo description
Gene3DG3DSA:3.30.160.609.1E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.1E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.977092IPR007087Zinc finger, C2H2
SMARTSM003550.00447092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355190112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DPDAEVIALS  60
PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLRQ KTNKDQVKKK VYICPEKSCV  120
HHDPCRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSRKDSFIT HRAFCDALAE ESSRITSIPT SNLNFRNDLP AHVFTGGSTG IPQIGGAEFG  240
NQLKPPPPRL SLWLDQANSQ QLNSVDVSGN SSIYMNSANI FTSSAGGNLS LSPLPPLQQS  300
LKDVDGGIMN KSTSMAETLS SLFSDDNHRN IGSNSSGPMS ATALLQKAAQ MGSTKSNPIF  360
FSNSLGVMSS SNSSSSSPVP VPVPAFSLSH NRNQQLLQTT TSSLDNNSFE FDQSMLQTSQ  420
NESPSTTTVT MMNFQGQGLN GGSVEHHNSL TRDFLGMGAG EGGRPLLPHE LAKFASMSSA  480
MGLDLGHFSS HHXSQSALVS TNVAYHSPSE TDSIQTRNRE FITLYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-38143212372Zinc finger protein JACKDAW
5b3h_F4e-38143212372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175139.10.0zinc finger protein JACKDAW
TrEMBLA0A068UDX21e-177A0A068UDX2_COFCA; Uncharacterized protein
STRINGcassava4.1_032876m1e-176(Manihot esculenta)