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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3304_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 526aa MW: 57171.8 Da PI: 9.144 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H cra_locus_3304_iso_1_len_2014_ver_3 70 FICEICNKGFQREQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ cra_locus_3304_iso_1_len_2014_ver_3 147 WKCEKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.99E-7 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-6 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.1E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.97 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0044 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.99E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 140 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSGNVFAVPS SLPVPGFSPD LINESSNPNP KPISNTNPSA KKKRNLPGTP DPDAEVIALS 60 PKTLMATNRF ICEICNKGFQ REQNLQLHRR GHNLPWKLRQ KTNKDQVKKK VYICPEKSCV 120 HHDPCRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYKCDCGT 180 LFSRKDSFIT HRAFCDALAE ESSRITSIPT SNLNFRNDLP AHVFTGGSTG IPQIGGAEFG 240 NQLKPPPPRL SLWLDQANSQ QLNSVDVSGN SSIYMNSANI FTSSAGGNLS LSPLPPLQQS 300 LKDVDGGIMN KSTSMAETLS SLFSDDNHRN IGSNSSGPMS ATALLQKAAQ MGSTKSNPIF 360 FSNSLGVMSS SNSSSSSPVP VPVPAFSLSH NRNQQLLQTT TSSLDNNSFE FDQSMLQTSQ 420 NESPSTTTVT MMNFQGQGLN GGSVEHHNSL TRDFLGMGAG EGGRPLLPHE LAKFASMSSA 480 MGLDLGHFSS HHXSQSALVS TNVAYHSPSE TDSIQTRNRE FITLYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-38 | 143 | 212 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 4e-38 | 143 | 212 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027175139.1 | 0.0 | zinc finger protein JACKDAW | ||||
TrEMBL | A0A068UDX2 | 1e-177 | A0A068UDX2_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_032876m | 1e-176 | (Manihot esculenta) |