 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_3299_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 248aa MW: 29381.9 Da PI: 4.9824 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_3299_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.5 | 2.3e-18 | 43 | 93 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+f++eq++ Le++F + ++ +++ eLA++lgL+ rqV++WFqN+Ra++k
cra_locus_3299_iso_1_len_1192_ver_3 43 RFSDEQVKSLESMFGQGTKIEPRKKIELARNLGLQPRQVSIWFQNKRARWK 93
79************************************************9 PP
|
| 2 | HD-ZIP_I/II | 115.5 | 3.2e-37 | 42 | 131 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeen 77
+r+s+eqvk+LE++F + +k+ep++K elar+Lglqprqv +WFqn+RAR+k+kq+E++y L++++d l+++
cra_locus_3299_iso_1_len_1192_ver_3 42 KRFSDEQVKSLESMFGQGTKIEPRKKIELARNLGLQPRQVSIWFQNKRARWKSKQIEQEYGLLRDNFDDLNQQF 115
8************************************************************************* PP
HD-ZIP_I/II 78 erLekeveeLreelke 93
++L++e+e+L +++++
cra_locus_3299_iso_1_len_1192_ver_3 116 KSLKEENESLLQQVQT 131
***********99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MEQEQDYYYS EQEQSLELDY TKEKKNYPTD HSKKKKGENS VKRFSDEQVK SLESMFGQGT 60
KIEPRKKIEL ARNLGLQPRQ VSIWFQNKRA RWKSKQIEQE YGLLRDNFDD LNQQFKSLKE 120
ENESLLQQVQ TLRSRLRNSI ENGVQRESEN GNDENCDKEE LKEKEKHRGA LYWEDDDDDD 180
DEQKTGLEKG KNCNNNVCVD GRRSLASSHS HSQTDDHHHN KEEEQYWCNF PTAGDLLDES 240
SSGWWNHI
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
