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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_3219_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 279aa MW: 30329.3 Da PI: 9.1508 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 33 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky cra_locus_3219_iso_9_len_1715_ver_3 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-17 | 27 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 28 | 82 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.0E-19 | 31 | 80 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 31 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 32 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-12 | 33 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-9 | 35 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MANSVAASDG SGSTSGSGSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED 60 FVGSKTVIQI RSHAQKYFLK VQKNGTIAHV PPPRPKRKAA HPYPQKAPKN VLVPAQASIG 120 YPSAVNSLAP GYPTWDDASL LVSVPPSGIL PSQDEYNLHG AEADIGSKGA TRISNSNISG 180 IGSSSRTLPA SEVPKQGKQG SLVHGIPDFA EVYSFIGSVF DPETKGHVQK LKEMDPINFE 240 TVLLLMRNLT VNLANPDFEP IKQVLSSYDA KQPSYELPC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070765.1 | 1e-169 | protein REVEILLE 8 isoform X1 | ||||
Refseq | XP_027175530.1 | 1e-169 | protein REVEILLE 8-like isoform X1 | ||||
Swissprot | Q8RWU3 | 1e-135 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A1DR84 | 0.0 | A1DR84_CATRO; MYB transcription factor | ||||
STRING | Solyc10g084370.1.1 | 1e-157 | (Solanum lycopersicum) |