PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_31727_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 301aa MW: 33305.4 Da PI: 8.0669

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_31727_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	1	23	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ cra_locus_31727_iso_1_len_920_ver_3 1 WVCEKCSKGYAVQSDYKAHLKTC 23 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN MGRIRSESHS 60 LPASAAACLS RTASSPSPST ETNLSAAAPP WPPLLMPKPI HTNFLITPKN KSSSNRGEQS 120 RDSNLELQLL TTSSPVDLST FKRDEEYHST QLQLSIGSSD FSDKNELEIS NININATMGC 180 SRRHHDQEEE ANIRDELRAA MAEKAYAEEA RKQAKRQIEL AEAEFVNAKR IRQQAQAELE 240 KAVAFKQLSA KKINATILEI TCHTCKDKFQ ASAARTTSSS LTVGEVVGKG DRFLHPKFTL 300 C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-18	1	50	7	56	Zinc finger protein JACKDAW
5b3h_F	8e-18	1	50	7	56	Zinc finger protein JACKDAW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027125330.1	1e-119	zinc finger protein SHOOT GRAVITROPISM 5-like isoform X2
Refseq	XP_027167236.1	1e-119	zinc finger protein SHOOT GRAVITROPISM 5-like isoform X2
TrEMBL	A0A068TRJ7	1e-117	A0A068TRJ7_COFCA; Uncharacterized protein
STRING	XP_002534293.1	1e-107	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82