PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_29873_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 22900.6 Da PI: 8.6837 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.9 | 1.2e-36 | 22 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 aCa+Ck++rr+Ca++C+lapyfpae+p++f n+hklFG++n+ k+lk++++ +r++a++s++y+A+ara+d v cra_locus_29873_iso_1_len_773_ver_3 22 ACASCKYQRRRCAPGCPLAPYFPAENPQQFTNAHKLFGVRNLAKVLKNMKPPQRDMAIKSMIYQANARANDRVG 95 7************************************************************************* PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G+++++++l +q+e +ael+ + ++ cra_locus_29873_iso_1_len_773_ver_3 96 GCYRIVQELMKQIELCEAELDIVLQQ 121 *******************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.472 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-36 | 22 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
GGFSKRSGSV GNGKGISSSS RACASCKYQR RRCAPGCPLA PYFPAENPQQ FTNAHKLFGV 60 RNLAKVLKNM KPPQRDMAIK SMIYQANARA NDRVGGCYRI VQELMKQIEL CEAELDIVLQ 120 QLALYRAEAT ENEIQGFDTT SSTGIGTSNN TNITTTGCVN GENGNGDGIS VDVVLNFNNS 180 IQVSSSSGFH FNSHRHHQNA SVNLEDLPVT R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-29 | 23 | 125 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-29 | 23 | 125 | 12 | 114 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700669.1 | 7e-50 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 3e-42 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A1U8KIZ9 | 2e-48 | A0A1U8KIZ9_GOSHI; LOB domain-containing protein 22-like | ||||
STRING | Gorai.011G064500.1 | 3e-49 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Publications ? help Back to Top | |||
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