PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_29310_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 304aa MW: 32903.3 Da PI: 9.3732

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_29310_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	29	87	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+s cra_locus_29310_iso_1_len_1135_ver_3 29 TENLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTS 87 67899***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.4E-33	31	86	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	32	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MIHQESAASS GEIKVPKPIS PSSSPPAATE NLRCPRCDST NTKFCYYNNY NLTQPRHFCK 60 TCRRYWTKGG ALRNVPIGGG CRKNKTSSPI TSSSSSSSVA NKLSSNAVKL KTTTFSSSAE 120 IGKSTFISSL EHELYSSNSN PILWPNQNNS HLLSLLRPNP NLNPNPISSE SAVGRIFGLD 180 AFGLTVNPNS VWRNNNNHHQ QQQQQQNNGG VILGLEDFYQ RVRSSTSNQI NYQDASIIGG 240 NMGITTEAKS SSTLILESAP VGAGVGGTHE LMNYSNSSSW SNNNNPAVFS WSDLPTTHGT 300 AYPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153793.1	3e-70	dof zinc finger protein DOF5.7-like
TrEMBL	A0A068U1N5	6e-64	A0A068U1N5_COFCA; Uncharacterized protein
STRING	POPTR_0007s11620.1	3e-62	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419