 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | cra_locus_290_iso_3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
| Family | NAC | ||||||||
| Protein Properties | Length: 362aa MW: 41851 Da PI: 9.4954 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 164.7 | 3.2e-51 | 69 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75
lppGfrFhPtd+elv++yL++k++++++++ +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+n
cra_locus_290_iso_3_len_1697_ver_3 69 LPPGFRFHPTDDELVTHYLCRKCAAQPISV-PIIAEIDLYKFNPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPN 142
79****************************.88***************6666689******************** PP
NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
ra+ +gyWkatg dk++ + + g+kk Lvfy g+apkg kt+W+mheyrl
cra_locus_290_iso_3_len_1697_ver_3 143 RAAGTGYWKATGADKPIGK--PKPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 193
*****************98..789***************************98 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.96E-61 | 66 | 220 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 60.035 | 69 | 220 | IPR003441 | NAC domain |
| Pfam | PF02365 | 6.5E-27 | 70 | 193 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 362 aa Download sequence Send to blast |
WPLRPGDPRN FRNSVAAGLS RRKSITVQLL LIRRGEKGSN RKLXLQKGMD YIGYRESIDS 60 GDRNQKLDLP PGFRFHPTDD ELVTHYLCRK CAAQPISVPI IAEIDLYKFN PWDLPGMALY 120 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPIG KPKPLGIKKA LVFYAGKAPK 180 GIKTNWIMHE YRLANVDRSA AGKRTNSRLD DWVLCRIYNK KGTLEKYNNV DQIQNSIEFQ 240 EDKPRIIGFG QSETARKSNP PPMQPNVQQT RNDYLHFETS ESVPRLHTDS SGSEQVLSPD 300 FQCEKEVQSA PKWDELERTL DYQMNFMDSF QNDDDPFGSQ MQYHQHFSSP FQDVFMYMQK 360 PF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3ulx_A | 5e-82 | 62 | 226 | 8 | 174 | Stress-induced transcription factor NAC1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027073683.1 | 1e-160 | protein ATAF2-like | ||||
| Swissprot | Q39013 | 1e-127 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
| TrEMBL | A0A2U9IY22 | 0.0 | A0A2U9IY22_CATRO; NAC domain containing protein 002 | ||||
| STRING | EOX92686 | 1e-146 | (Theobroma cacao) | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|