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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_290_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 45847.5 Da PI: 8.8758 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.9e-51 | 69 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lppGfrFhPtd+elv++yL++k++++++++ +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+n cra_locus_290_iso_2_len_1809_ver_3 69 LPPGFRFHPTDDELVTHYLCRKCAAQPISV-PIIAEIDLYKFNPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPN 142 79****************************.88***************6666689******************** PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ra+ +gyWkatg dk++ + + g+kk Lvfy g+apkg kt+W+mheyrl cra_locus_290_iso_2_len_1809_ver_3 143 RAAGTGYWKATGADKPIGK--PKPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 193 *****************98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-57 | 66 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.082 | 69 | 257 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-27 | 70 | 193 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.03E-57 | 245 | 257 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
WPLRPGDPRN FRNSVAAGLS RRKSITVQLL LIRRGEKGSN RKLXLQKGMD YIGYRESIDS 60 GDRNQKLDLP PGFRFHPTDD ELVTHYLCRK CAAQPISVPI IAEIDLYKFN PWDLPGMALY 120 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPIG KPKPLGIKKA LVFYAGKAPK 180 GIKTNWIMHE YRLANVAAPP PAKEPTPGYV MSNFVTTYFX YCRLSSIGSN LTNYGLGLCL 240 CMSMQLDDWV LCRIYNKKGT LEKYNNVDQI QNSIEFQEDK PRIIGFGQSE TARKSNPPPM 300 QPNVQQTRND YLHFETSESV PRLHTDSSGS EQVLSPDFQC EKEVQSAPKW DELERTLDYQ 360 MNFMDSFQND DDPFGSQMQY HQHFSSPFQD VFMYMQKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-76 | 62 | 263 | 8 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073683.1 | 1e-146 | protein ATAF2-like | ||||
Swissprot | Q39013 | 1e-115 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2U9IY22 | 0.0 | A0A2U9IY22_CATRO; NAC domain containing protein 002 | ||||
STRING | EOX92686 | 1e-133 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |