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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_290_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 28574 Da PI: 8.8886 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.5 | 8.5e-30 | 5 | 77 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + + g+kk Lvfy g+apkg kt+W+mheyrl cra_locus_290_iso_1_len_1416_ver_3 5 GEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PKPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 77 579************************************98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.752 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.62E-36 | 3 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-14 | 9 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPIGKPKPLG IKKALVFYAG 60 KAPKGIKTNW IMHEYRLANV DRSAAGKRTN SRLDDWVLCR IYNKKGTLEK YNNVDQIQNS 120 IEFQEDKPRI IGFGQSETAR KSNPPPMQPN VQQTRNDYLH FETSESVPRL HTDSSGSEQV 180 LSPDFQCEKE VQSAPKWDEL ERTLDYQMNF MDSFQNDDDP FGSQMQYHQH FSSPFQDVFM 240 YMQKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 2 | 110 | 64 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027179157.1 | 1e-121 | protein ATAF2-like | ||||
Swissprot | Q39013 | 3e-92 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2U9IY22 | 0.0 | A0A2U9IY22_CATRO; NAC domain containing protein 002 | ||||
STRING | EOX92686 | 1e-110 | (Theobroma cacao) |