 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
cra_locus_28900_iso_1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
Family |
AP2 |
Protein Properties |
Length: 137aa MW: 15321.8 Da PI: 8.0444 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
cra_locus_28900_iso_1 | genome | MPGR | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 45.7 | 1.7e-14 | 26 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a++k +g
cra_locus_28900_iso_1_len_408_ver_3 26 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAALKCNG 76
89********.7******...5...334336**********99**********99876 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 137 aa
Download sequence Send
to blast |
XMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE 60 IEAARAYDKA ALKCNGREAV TNFDPSLYEG ELISEEDNSG RKDGLNLNLG IAPPNLAVEE 120 NKNMNTGGFE FQCGSNX
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]
|