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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_2813_iso_3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
LSD |
| Protein Properties |
Length: 164aa MW: 18062 Da PI: 7.5732 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_2813_iso_3 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 45.9 | 9.2e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP GA+sV+Ca+C++V
cra_locus_2813_iso_3_len_941_ver_3 28 CSGCRNLLMYPVGATSVCCAVCNAV 52
************************9 PP
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| 2 | zf-LSD1 | 46.3 | 7.1e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+t+
cra_locus_2813_iso_3_len_941_ver_3 67 CGGCHTLLMYIRGATSVQCSCCHTI 91
***********************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MPVPLAPYPS PPVPFTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPGT 60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT INLAMEXXXX XXXXXXXXXX XXXXXXXXXX 120
XXXXXXXXXX XXXXXXXXXX XXXXFFFFSG RDLDMKIRNN SSFY
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