PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2781_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CAMTA
Protein Properties Length: 1135aa    MW: 127298 Da    PI: 6.3232
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2781_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.31.1e-56211363118
                                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76 
                                          + ++rwl++ ei++iL n++k+++t e++ +p sgs++L++rk++ryfrkDG+sw+kkkdgktv+E+hekLKvg
  cra_locus_2781_iso_7_len_3815_ver_3  21 EAQHRWLRPAEICEILRNYQKFHITPEPPLKPVSGSVFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHEKLKVG 94 
                                          569*********************************************************************** PP

                                 CG-1  77 gvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                                          ++++l+cyYah+een++fqrr+yw+Le++l +iv+vhylevk
  cra_locus_2781_iso_7_len_3815_ver_3  95 SIDMLHCYYAHGEENENFQRRSYWMLEQDLMHIVFVHYLEVK 136
                                          ***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.98315141IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.5E-7483571IPR013783Immunoglobulin-like fold
PfamPF018335.4E-9484570IPR002909IPT domain
SuperFamilySSF812963.11E-18485571IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.5E-13669727IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.79E-12669728IPR020683Ankyrin repeat-containing domain
CDDcd002043.47E-8674729No hitNo description
PROSITE profilePS5029712.514680729IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-13796845IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.79E-12797842IPR020683Ankyrin repeat-containing domain
SuperFamilySSF525403.72E-79551007IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.17956978IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.84957986IPR000048IQ motif, EF-hand binding site
PfamPF006120.0027958977IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039791001IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.4329801004IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-49821001IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1135 aa     Download sequence    Send to blast
MAGSGSQNLG FRLDIKQILC EAQHRWLRPA EICEILRNYQ KFHITPEPPL KPVSGSVFLF  60
DRKVLRYFRK DGHSWRKKKD GKTVKEAHEK LKVGSIDMLH CYYAHGEENE NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKT NINCLLDSET VSSNSQNDTL SFSSSANGDN LAAAYTDTTS  180
PTSTLTSAYE ETECAQQNVE DNYRPSSRVH SHPGTPQSES IPAAQHVDAG LSSSYSLLQS  240
LGTQMTPSGE YIPFSHGQGG AHGHEGSFVP GIQRTLDLAS WEEVWGNSTT AEISSDHHSW  300
NPSGLQANWQ YPQGDSSLSF QGLPEQNLIS SSASDDRGNF LDHRSIPANF QRLADPFYVN  360
AEGLEKELVQ REHQKLLSNA QISYMKKDKA ENGNAAMGSG SLVLKQSQLS GIKIDDGLKK  420
VDSFSRWMAK ELGEVEELHL QTNNGYSWSE IQTEDVVDSS GMPSQLQLEA DTLNFSLSQD  480
QLFSITDFSP NWAYSNSETK VIITGRYLKS DQLFVNCKWS CMFGEVEVPA VVLGEGVLCC  540
HAPRHKPGLV PFYVTCSNRL ACSEVRDFEY RAGPQDIPRG DTDVMHICRR LDRLLSIGPV  600
VSINNFSENV VERNDIVKKI ISLMEEDDNQ MPKLASGKDI SLLKAVEVQQ AEKWLRDKFY  660
EWILNKVKED GRGPSIIDDE GQGVLHLAAA LGFNWALEPI IVSGVSIDFR DVNGWTALHW  720
AAFYGRXKLF CCKRKKHLVA LLFIFLVFLI NHIXCNLTIL FSLVAIIFTK LFLYIHLNEV  780
KMFEECWVFT AFYREDTVAA LVSLGASCGP LTDPTAEHPL GRTPADLASA NGHKGISGFL  840
AECSLTAHLE LLTVKETEED STLEYSGANA IQTVSERVAA PISGGDVPDS LSLKDSLAAV  900
CNATQAAARI HQIFRVQSFQ RKQLIERTVN DDASSDEYAL SILAAKTSRL GQNDVTAHAA  960
AVSIQKKYRG WKKRKEFLII RQRIVKIQAH VRGHQVRKKY KPIIWSVGIL EKVILRWRRK  1020
GSGLRGYRPD AVAKVPGELD MPQKEDDYDF LKEGRKQTEE RLQKALTRVK SMAQYPEARA  1080
QYRRLLTVAE GLRQTKDASD MVVTSGSENV SYPEEDLLDV ENLLDDETFM SIAFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A4e-14485574992calmodulin binding transcription activator 1
2cxk_B4e-14485574992calmodulin binding transcription activator 1
2cxk_C4e-14485574992calmodulin binding transcription activator 1
2cxk_D4e-14485574992calmodulin binding transcription activator 1
2cxk_E4e-14485574992calmodulin binding transcription activator 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106275.10.0calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A068TQ040.0A0A068TQ04_COFCA; Uncharacterized protein
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146