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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2744_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 23215.8 Da PI: 8.9166 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.7e-17 | 30 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ cra_locus_2744_iso_2_len_905_ver_3 30 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 75 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 17 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.49E-18 | 17 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.464 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 30 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.11E-11 | 32 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 37 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
FIAKVSGLKV AGDTNNRLRW VNYLHPGLKR GKMTPHEERL VLELHSKWGN RWSRIARKLP 60 GRTDNEIKNY WRTHMRKKAQ DQRKKASNNN NNLSPTSSSS LSNCSSSSSN SQGNNSPTVD 120 SVLITETKDR SFYDTGGFEF DQIEAEKKKN MSNEEETEEL ERGPKFYSMD EIWKDIEMSE 180 DDAIKPVNYD YQKMDSPQMW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-14 | 17 | 79 | 43 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-14 | 17 | 79 | 97 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-14 | 17 | 79 | 97 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-14 | 17 | 79 | 66 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 4e-14 | 17 | 79 | 43 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-14 | 17 | 79 | 43 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108891.1 | 3e-67 | transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 2e-51 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A218XXJ4 | 1e-63 | A0A218XXJ4_PUNGR; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 4e-60 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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