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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_27322_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 32915.6 Da PI: 9.3674 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.6e-39 | 49 | 109 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s cra_locus_27322_iso_1_len_1003_ver_3 49 KEHALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSM 109 67899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-30 | 46 | 107 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 51 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.171 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
XAGGFLVCLF LNYDLFLHVI QENIGGGGAA KPMSAAARGA VERKLRPQKE HALNCPRCNS 60 TNTKFCYYNN YSLTQPRYFC KTCRRYWTEG GTLRNVPVGG GSRKNKRSMN IITSSSSSSS 120 ISTSLHDLNP SKNIHLVHGQ DLNLGFSSLL QDYNNNHGHH VVPQFFELPK SSSNNSSSLL 180 SLQEKQQIAT SPLAALELLR MGIGMNSSNF IPNPTPDLNS IYSTNGFSFQ DLKIGGGGGH 240 IGVQENSETT RTLMFPFGGM KQQVSSGTNT SEVVNHHENI KGQQTSNGSY WNGMLGGAAG 300 GTW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538283.1 | 2e-72 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X1 | ||||
Refseq | XP_016538284.1 | 2e-72 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X2 | ||||
TrEMBL | A0A068UJL6 | 5e-75 | A0A068UJL6_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |