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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_26911_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 24585.2 Da PI: 9.8177 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.3 | 4.9e-56 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL +k+++++++ +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+ cra_locus_26911_iso_1_len_787_ver_3 15 LPPGFRFHPTDEELITYYLINKISDSSFTG-RAVADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRT 87 79*************************999.88***************99999********************* PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat++gyWk+tgkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ cra_locus_26911_iso_1_len_787_ver_3 88 NRATNTGYWKTTGKDKEIYNSvSSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 142 *******************9989999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-64 | 13 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.295 | 15 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-29 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEGDQVNNKG ADETLPPGFR FHPTDEELIT YYLINKISDS SFTGRAVADV DLNKCEPWDL 60 PGKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNTGYWKTTG KDKEIYNSVS SELVGMKKTL 120 VFYRGRAPRG EKTNWVMHEY RIHAKSSYRT TKQDEWVVCR VFQKSAGGKK FPSSNHSRAA 180 ALLNANYNIN IDHHHQINQN SISSSSSSHH HHHX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-59 | 3 | 170 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-59 | 3 | 170 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-59 | 3 | 170 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-59 | 3 | 170 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-59 | 3 | 170 | 8 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-59 | 3 | 170 | 5 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-59 | 3 | 170 | 5 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027080183.1 | 1e-120 | NAC domain-containing protein 92-like isoform X1 | ||||
Refseq | XP_027121707.1 | 1e-120 | NAC domain-containing protein 92-like isoform X1 | ||||
Swissprot | Q9FLJ2 | 2e-84 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A068VET3 | 1e-118 | A0A068VET3_COFCA; Uncharacterized protein | ||||
STRING | EOY29157 | 1e-117 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Publications ? help Back to Top | |||
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