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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2664_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 770aa MW: 84145.7 Da PI: 6.6183 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.3e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ cra_locus_2664_iso_9_len_2838_ver_3 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.173 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.1E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MDPYSSGEEI VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEALVKG VPIGQALDIE IPPPRPKRKP CNPYPRKISN GRTTCQVGSK 120 DEKSGIPVYS VSQAKHVLDL EKEPTPERNS DERIACAKEN QDENRNSGFV LLSTSPHTCP 180 SSANKSSMPT LAVPRKSCTF KEFVPVINEV VNKDETNESY VTVEPRENQY SAKSDTRQSF 240 PENGICDSMT LAKTHPVNEN LVVGKGQNLD QSKKETELKN DVQNMEGQPR HVPVHILDGS 300 LGMNAANVSF HMSSQQSMFH QMGGVHPNLF MNLSSSSTSE HQNSTPRFTI NQPFPGIHPI 360 VTPIQNQDDY QSLLHASSAF SSLIVSTLLQ NPAAHAAASF AASFWPCSSM EDPAGSAAGT 420 TGGFPVRQIN TTPSIAAIAA ATVAAATAWW AAHGVLPVCA PFHMSFNYAP ASAASTVPVG 480 ASQARADNSE RKEKTDAPAL ETAQMEAELS SEALQEQHST SKSPALSMSD SDEINGLKLH 540 NGSTAIETEK AVAAAQLHDN KAKGRKQVDR SSCGSNTPSS SEVETDALEK HEKGNEELRE 600 AAIDHPTGDS ISRRGRSSSG SNDSWKEVSE EGRLAFQALF SREVLPQSFS PPYDSMNNLE 660 KDKQTVDEKD TEGSPSRVDV SGKIGGVSCC SQPAEENVYL KGETNKLTAE GLLTMGKFKV 720 RHTGFKPYKR CSVEAQQQEC SRVVNTSSCQ DQEKGPKRIR LEAEASNLIP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108592.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_027108593.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_027108594.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A068UJ96 | 0.0 | A0A068UJ96_COFCA; Uncharacterized protein | ||||
STRING | VIT_15s0048g02410.t01 | 0.0 | (Vitis vinifera) |