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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2664_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 749aa MW: 81750 Da PI: 6.5514 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.3e-07 | 24 | 47 | 1 | 25 |
TSSS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWk 25 r rWT+eE+ ++++a k++G W cra_locus_2664_iso_2_len_2776_ver_3 24 RERWTEEEHNRFLEALKLYGRA-WQ 47 78******************77.86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.34E-7 | 18 | 55 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-4 | 21 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MDPYSSGEEI VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRKK LEKEALVKGV 60 PIGQALDIEI PPPRPKRKPC NPYPRKISNG RTTCQVGSKD EKSGIPVYSV SQAKHVLDLE 120 KEPTPERNSD ERIACAKENQ DENRNSGFVL LSTSPHTCPS SANKSSMPTL AVPRKSCTFK 180 EFVPVINEVV NKDETNESYV TVEPRENQYS AKSDTRQSFP ENGICDSMTL AKTHPVNENL 240 VVGKGQNLDQ SKKETELKND VQNMEGQPRH VPVHILDGSL GMNAANVSFH MSSQQSMFHQ 300 MGGVHPNLFM NLSSSSTSEH QNSTPRFTIN QPFPGIHPIV TPIQNQDDYQ SLLHASSAFS 360 SLIVSTLLQN PAAHAAASFA ASFWPCSSME DPAGSAAGTT GGFPVRQINT TPSIAAIAAA 420 TVAAATAWWA AHGVLPVCAP FHMSFNYAPA SAASTVPVGA SQARADNSER KEKTDAPALE 480 TAQMEAELSS EALQEQHSTS KSPALSMSDS DEINGLKLHN GSTAIETEKA VAAAQLHDNK 540 AKGRKQVDRS SCGSNTPSSS EVETDALEKH EKGNEELREA AIDHPTGDSI SRRGRSSSGS 600 NDSWKEVSEE GRLAFQALFS REVLPQSFSP PYDSMNNLEK DKQTVDEKDT EGSPSRVDVS 660 GKIGGVSCCS QPAEENVYLK GETNKLTAEG LLTMGKFKVR HTGFKPYKRC SVEAQQQECS 720 RVVNTSSCQD QEKGPKRIRL EAEASNLIP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108592.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_027108593.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_027108594.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A068UJ96 | 0.0 | A0A068UJ96_COFCA; Uncharacterized protein | ||||
STRING | VIT_15s0048g02410.t01 | 0.0 | (Vitis vinifera) |