PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2664_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 749aa    MW: 81750 Da    PI: 6.5514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2664_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.3e-072447125
                                         TSSS-HHHHHHHHHHHHHTTTT-HH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWk 25
                                         r rWT+eE+ ++++a k++G   W 
  cra_locus_2664_iso_2_len_2776_ver_3 24 RERWTEEEHNRFLEALKLYGRA-WQ 47
                                         78******************77.86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.34E-71855IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-42149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MDPYSSGEEI VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRKK LEKEALVKGV  60
PIGQALDIEI PPPRPKRKPC NPYPRKISNG RTTCQVGSKD EKSGIPVYSV SQAKHVLDLE  120
KEPTPERNSD ERIACAKENQ DENRNSGFVL LSTSPHTCPS SANKSSMPTL AVPRKSCTFK  180
EFVPVINEVV NKDETNESYV TVEPRENQYS AKSDTRQSFP ENGICDSMTL AKTHPVNENL  240
VVGKGQNLDQ SKKETELKND VQNMEGQPRH VPVHILDGSL GMNAANVSFH MSSQQSMFHQ  300
MGGVHPNLFM NLSSSSTSEH QNSTPRFTIN QPFPGIHPIV TPIQNQDDYQ SLLHASSAFS  360
SLIVSTLLQN PAAHAAASFA ASFWPCSSME DPAGSAAGTT GGFPVRQINT TPSIAAIAAA  420
TVAAATAWWA AHGVLPVCAP FHMSFNYAPA SAASTVPVGA SQARADNSER KEKTDAPALE  480
TAQMEAELSS EALQEQHSTS KSPALSMSDS DEINGLKLHN GSTAIETEKA VAAAQLHDNK  540
AKGRKQVDRS SCGSNTPSSS EVETDALEKH EKGNEELREA AIDHPTGDSI SRRGRSSSGS  600
NDSWKEVSEE GRLAFQALFS REVLPQSFSP PYDSMNNLEK DKQTVDEKDT EGSPSRVDVS  660
GKIGGVSCCS QPAEENVYLK GETNKLTAEG LLTMGKFKVR HTGFKPYKRC SVEAQQQECS  720
RVVNTSSCQD QEKGPKRIRL EAEASNLIP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108592.10.0protein LHY isoform X1
RefseqXP_027108593.10.0protein LHY isoform X1
RefseqXP_027108594.10.0protein LHY isoform X1
TrEMBLA0A068UJ960.0A0A068UJ96_COFCA; Uncharacterized protein
STRINGVIT_15s0048g02410.t010.0(Vitis vinifera)