PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_26578_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 315aa MW: 34403.6 Da PI: 7.7593

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_26578_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40.6	7.2e-13	4	63	1	55
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C+++C l ++ p++q++++ +++k++G++ +l+ll+a p++ r+ cra_locus_26578_iso_2_len_1457_ver_3 4 SCNGCRVLRKGCNEKCNLKTCLqwiksPESQANATVFLAKFYGRAGLLNLLNAGPQHLRP 63 6******************************************************99986 PP
2	DUF260	34.7	5.1e-11	99	141	56	98
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 ++++sl+yeA+ r+ +P+yG++g++++++++l+q+++e +l + cra_locus_26578_iso_2_len_1457_ver_3 99 AIFRSLLYEACGRIVNPIYGSAGLLWSGNWHLCQAAVEGVLNG 141 689********************************99977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.353	3	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-9	4	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-6	99	136	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MRMSCNGCRV LRKGCNEKCN LKTCLQWIKS PESQANATVF LAKFYGRAGL LNLLNAGPQH 60 LRPGNFILTT SKFKTKKKLV YDCFVWGRKI DESLCFFAAI FRSLLYEACG RIVNPIYGSA 120 GLLWSGNWHL CQAAVEGVLN GSPITQISAD SDACTVSPPL KACDIRHVSK DENSSASAAR 180 DLHKVTKTRG KFKRTVAKPK VRAESPDVDD AARVMWSWSH KDEVIGSPSR NSGVSQHVEP 240 ENPVGDDDSG SVETVEESVV KAANKKGADR SDVELELSLG LXACPPKQVE VEINGXDESS 300 CKMDGAGCDW DLIID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027124508.1	1e-130	LOB domain-containing protein 41-like
Swissprot	Q9M886	2e-75	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A068TQW5	1e-127	A0A068TQW5_COFCA; Uncharacterized protein
STRING	XP_009792341.1	1e-108	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94