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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_2614_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 37596.4 Da PI: 6.6821 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.2e-56 | 9 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL +kv ++++++ +i evd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+ cra_locus_2614_iso_7_len_1233_ver_3 9 LPPGFRFHPTDEELITHYLSPKVLDNSFSA-IAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCVKDRKYPTGLRT 81 79*************************999.88***************888999******************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat++gyWkatgkdke+++ ++lvg+kktLvfy+grapkgekt+Wvmheyrle cra_locus_2614_iso_7_len_1233_ver_3 82 NRATDAGYWKATGKDKEIFK-VKSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 135 ********************.8889****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-60 | 6 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.786 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-30 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MERDEKMDLP PGFRFHPTDE ELITHYLSPK VLDNSFSAIA IGEVDLNKVE PWDLPWKAKM 60 GEKEWYFFCV KDRKYPTGLR TNRATDAGYW KATGKDKEIF KVKSLVGMKK TLVFYRGRAP 120 KGEKTNWVMH EYRLEGQNSI HNLSKVAKNE WVMRIFKKST GGKKVHISGL IKMNNYGDQE 180 DLGTSNLPPL MDLSSEETQP RTTTTIAEAS HVTCFSNQME DGQKPQMPAS SILSSQIMPY 240 LESMQFGDSI SMDDHSIMRL LMDENGGNSR QNPNANNNQE FSQETGISTD ISSPVSNRVE 300 WRRPSYGHHQ EFHQISSAGP VDLDCLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 6 | 164 | 17 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027152794.1 | 1e-149 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 1e-121 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A068U1T7 | 1e-145 | A0A068U1T7_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0108g01070.t01 | 1e-136 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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