![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_2614_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 270aa MW: 30746.6 Da PI: 8.0901 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108 | 1.2e-33 | 2 | 76 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdke+++ ++lvg+kktLvfy+grapkgekt+Wvmheyrl cra_locus_2614_iso_2_len_898_ver_3 2 GEKEWYFFCVKDRKYPTGLRTNRATDAGYWKATGKDKEIFK-VKSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 75 579**************************************.8889****************************8 PP NAM 129 e 129 e cra_locus_2614_iso_2_len_898_ver_3 76 E 76 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.637 | 1 | 99 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-35 | 2 | 99 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-16 | 6 | 75 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MGEKEWYFFC VKDRKYPTGL RTNRATDAGY WKATGKDKEI FKVKSLVGMK KTLVFYRGRA 60 PKGEKTNWVM HEYRLEGQNS IHNLSKVAKN EWVMRIFKKS TGGKKVHISG LIKMNNYGDQ 120 EDLGTSNLPP LMDLSSEETQ PRTTTTIAEA SHVTCFSNQM EDGQKPQMPA SSILSSQIMP 180 YLESMQFGDS ISMDDHSIMR LLMDENGGNS RQNPNANNNQ EFSQETGIST DISSPVSNRV 240 EWRRPSYGHH QEFHQISSAG PVDLDCLWNY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-31 | 1 | 105 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-31 | 1 | 105 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-31 | 1 | 105 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-31 | 1 | 105 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-31 | 1 | 105 | 71 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-31 | 1 | 105 | 68 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-31 | 1 | 105 | 68 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028058237.1 | 1e-107 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 3e-83 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A068U1T7 | 1e-102 | A0A068U1T7_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0108g01070.t01 | 6e-98 | (Vitis vinifera) | ||||
STRING | cassava4.1_010528m | 2e-98 | (Manihot esculenta) |
Publications ? help Back to Top | |||
---|---|---|---|
|