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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_25985_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 509aa MW: 55201.5 Da PI: 9.3192 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H cra_locus_25985_iso_5_len_1865_ver_3 74 FICEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00037 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ cra_locus_25985_iso_5_len_1865_ver_3 150 FKCDKCSKKYAVQSDWKAHSKTC 172 89*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.7E-8 | 73 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.5E-6 | 73 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.4E-5 | 74 | 96 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 115 | 145 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 138 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.7E-8 | 145 | 170 | No hit | No description |
SMART | SM00355 | 99 | 150 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MAAAASSSGV FLSMREGDDS QQTNQLGHHL QAPALPASSS QPQNPAPKRR RNQPDPDAEV 60 IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLRQKTTKEV KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH YSRKHGEKKF KCDKCSKKYA VQSDWKAHSK TCGTREYRCD 180 CGXPFLRRDS FITHRAFCDA LAQESARNPP SLTGIGSHLF GNTTSNGNNM SLGLSQLSAQ 240 ISASQDQNQN HSHSASDILR LGNNSRQFEQ HHHHNHNLIG AAGVGSSSTM QGSSAFRTPS 300 QTMPLPSSSF FLPPDHHQPD DQDYRHHHEH HHQPSLHHHG LMRLSDLHNN VPQSTAPNIF 360 NLSFFPTSMA ETTNNVGGGG GLLQLPNPFN NGHNSSGGGG SSNELGSSLF SSSGSLVGGG 420 GDMTSAIPSL YSSSILHHHQ SHGDVGHMSA TALLQKAAQL GSTTSNSSAS SLLKSFGSTT 480 SNGSVFGTAT DHHHHHQNNV NGGNNNNHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-30 | 146 | 207 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-30 | 146 | 207 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379802.2 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006379803.2 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006379804.2 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024463340.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024463341.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-116 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2K1ZH36 | 1e-158 | A0A2K1ZH36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14180.4 | 1e-159 | (Populus trichocarpa) |
Publications ? help Back to Top | |||
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