PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2592_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 341aa    MW: 37630.8 Da    PI: 8.865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2592_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-1369120147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                                          +++WT eE+e l  +v+++G+g Wk I r        + R+  ++k++w+++
  cra_locus_2592_iso_6_len_1302_ver_3  69 KQKWTSEEEEALRAGVRKHGTGKWKNIQRDPEfshllNSRSNIDLKDKWRNL 120
                                          79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.20864125IPR017930Myb domain
SuperFamilySSF466893.09E-1666122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1467121IPR009057Homeodomain-like
SMARTSM007171.9E-868123IPR001005SANT/Myb domain
CDDcd116602.68E-2170121No hitNo description
PfamPF139217.6E-972128No hitNo description
SMARTSM005263.9E-15181246IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.807183251IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.2E-13184259IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.85E-14184262IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.4E-9186243IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
XGRGGNYKNE LEPTQTNAFA WTLLCDTKPS EERSRVLSFN GGSGRNCSGD FLSAGFRSVF  60
DRRDMGNPKQ KWTSEEEEAL RAGVRKHGTG KWKNIQRDPE FSHLLNSRSN IDLKDKWRNL  120
TVSASNGTGS RDKSKGQKLK LLTDAPAAPL PSSQTALTPS IPISHDVSVD IADDGSKGSD  180
AKAASRYNEM VYEALSALKD PNGSDTSAIV NFIEQRHEVP PNFRRLLTGR LRRLCSQEKL  240
EKVGNCYRIK KETQTEKVPP PKPKETVQAR QEKSTGYLGN TIEEAAFTAA HRVADAENKS  300
TIAAEAAKES ERISRMTEEA DALVLVATEF LESTSEILIR A
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175881.11e-126single myb histone 4-like
SwissprotF4IEY41e-68TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A068U3Q41e-123A0A068U3Q4_COFCA; Uncharacterized protein
STRINGXP_010242277.11e-105(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]