PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_25629_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 287aa    MW: 30691.2 Da    PI: 8.6223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_25629_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.4e-2325933199
                                          .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                                    B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                                          e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ r ++ +l+++++r+
  cra_locus_25629_iso_4_len_1465_ver_3 25 EKGFLLSFEDEIGKPWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVLFERH-RfDCDRLFIGWRRR 93
                                          578899***********************************************75.559999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00141394IPR003340B3 DNA binding domain
PfamPF023623.1E-202593IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-2425104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-182592IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.7443094IPR003340B3 DNA binding domain
CDDcd100173.58E-163283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
XSNGGGGGGG GGVNGSNESG AGTGEKGFLL SFEDEIGKPW RFRYSYWNSS QSYVLTKGWS  60
RFVKEKRLDA GDIVLFERHR FDCDRLFIGW RRRGSNTTSS SSNPSADSGG GGGGGVLVGQ  120
VQAGGGGGVG WTRMLFSSSS GNPYPGPGGG AVQQGHGSHG PAIPYQPDCL HAGAGAGGVL  180
QQEQEESQRN RGAPNGRKLR LFGVNLDLGL QPDDSTTDQP PPTPDLDPSS LSIQGQGQGL  240
NLGQGTGMGH YQYHHHHHRY YSNSPKLHHH PYNHQNHMVR HVVYFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-28219338113B3 domain-containing transcription factor NGA1
5os9_B2e-28219338113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173454.11e-65B3 domain-containing protein At2g36080-like isoform X1
TrEMBLA0A068UQ155e-61A0A068UQ15_COFCA; Uncharacterized protein